PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g009880.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 184aa    MW: 20644.8 Da    PI: 4.1967
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g009880.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.42.6e-181589886
                    -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
              B3  8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86
                     +  +s+ l +p ++ e+     + +kt +l+ + g+ W+v +  + +++++++++GW +Fv++n+Lk+g+f++F +dg
  Csa19g009880.1 15 LSQYSSDSLLIPVSYYEHLP--RPLPKTAILMGTGGKIWKVVM--KSRQEQVYFERGWANFVDDNDLKDGEFLIFVFDG 89
                    45667788********5555..55999****************..999999************************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.92E-237103IPR015300DNA-binding pseudobarrel domain
CDDcd100178.73E-20898No hitNo description
Gene3DG3DSA:2.40.330.106.3E-218103IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.938101IPR003340B3 DNA binding domain
SMARTSM010191.9E-1810101IPR003340B3 DNA binding domain
PfamPF023621.9E-151289IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MASGDVLPRF FSVYLSQYSS DSLLIPVSYY EHLPRPLPKT AILMGTGGKI WKVVMKSRQE  60
QVYFERGWAN FVDDNDLKDG EFLIFVFDGY RLYEVSIFGH GGCKEIRAAV EVEEISDGTE  120
DENNEISLES VIQDEEEETI DADAKSDTDY SPDSPDTTTI SVESAEVFNS PATTSRKRGY  180
KKH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A1e-22910310104At1g16640
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010486112.11e-134PREDICTED: B3 domain-containing protein REM21-like
SwissprotQ9M8K21e-75REM21_ARATH; B3 domain-containing protein REM21
TrEMBLD7L4S84e-76D7L4S8_ARALL; Transcriptional factor B3 family protein
STRINGfgenesh1_pm.C_scaffold_30004941e-75(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15612380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06160.13e-69B3 family protein